My Bibliography

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Nugent C, Sugimoto K. Getting to grips with circular chromosomes. Elife. 2020 Aug 5;9. doi: 10.7554/eLife.60150. PubMed PMID: 32755540; PubMed Central PMCID: PMC7406349.

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Ma M, Rodriguez A, Sugimoto K. Activation of ATR-related protein kinase upon DNA damage recognition. Curr Genet. 2020 Apr;66(2):327-333. doi: 10.1007/s00294-019-01039-w. Epub 2019 Oct 17. Review. PubMed PMID: 31624858; PubMed Central PMCID: PMC7073305.

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Biswas H, Goto G, Wang W, Sung P, Sugimoto K. Ddc2ATRIP promotes Mec1ATR activation at RPA-ssDNA tracts. PLoS Genet. 2019 Aug;15(8):e1008294. doi: 10.1371/journal.pgen.1008294. eCollection 2019 Aug. PubMed PMID: 31369547; PubMed Central PMCID: PMC6692047.

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Sugimoto K. Branching the Tel2 pathway for exact fit on phosphatidylinositol 3-kinase-related kinases. Curr Genet. 2018 Oct;64(5):965-970. doi: 10.1007/s00294-018-0817-9. Epub 2018 Feb 22. Review. PubMed PMID: 29470645; PubMed Central PMCID: PMC6842304.

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Goto GH, Ogi H, Biswas H, Ghosh A, Tanaka S, Sugimoto K. Two separate pathways regulate protein stability of ATM/ATR-related protein kinases Mec1 and Tel1 in budding yeast. PLoS Genet. 2017 Aug;13(8):e1006873. doi: 10.1371/journal.pgen.1006873. eCollection 2017 Aug. PubMed PMID: 28827813; PubMed Central PMCID: PMC5578694.

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Ogi H, Goto GH, Ghosh A, Zencir S, Henry E, Sugimoto K. Requirement of the FATC domain of protein kinase Tel1 for localization to DNA ends and target protein recognition. Mol Biol Cell. 2015 Oct 1;26(19):3480-8. doi: 10.1091/mbc.E15-05-0259. Epub 2015 Aug 5. PubMed PMID: 26246601; PubMed Central PMCID: PMC4591692.

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Goto GH, Zencir S, Hirano Y, Ogi H, Ivessa A, Sugimoto K. Binding of Multiple Rap1 Proteins Stimulates Chromosome Breakage Induction during DNA Replication. PLoS Genet. 2015 Aug;11(8):e1005283. doi: 10.1371/journal.pgen.1005283. eCollection 2015 Aug. PubMed PMID: 26263073; PubMed Central PMCID: PMC4532487.

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Bandhu A, Kang J, Fukunaga K, Goto G, Sugimoto K. Ddc2 mediates Mec1 activation through a Ddc1- or Dpb11-independent mechanism. PLoS Genet. 2014 Feb;10(2):e1004136. doi: 10.1371/journal.pgen.1004136. eCollection 2014 Feb. PubMed PMID: 24586187; PubMed Central PMCID: PMC3930518.

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Fukunaga K, Hirano Y, Sugimoto K. Subtelomere-binding protein Tbf1 and telomere-binding protein Rap1 collaborate to inhibit localization of the Mre11 complex to DNA ends in budding yeast. Mol Biol Cell. 2012 Jan;23(2):347-59. doi: 10.1091/mbc.E11-06-0568. Epub 2011 Nov 30. PubMed PMID: 22130795; PubMed Central PMCID: PMC3258178.

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Fukunaga K, Kwon Y, Sung P, Sugimoto K. Activation of protein kinase Tel1 through recognition of protein-bound DNA ends. Mol Cell Biol. 2011 May;31(10):1959-71. doi: 10.1128/MCB.05157-11. Epub 2011 Mar 14. PubMed PMID: 21402778; PubMed Central PMCID: PMC3133365.

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Sugimoto K. [Telomere maintenance by DNA damage response machinery]. Seikagaku. 2010 Dec;82(12):1145-50. Review. PubMed PMID: 21348272.

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Hirano Y, Fukunaga K, Sugimoto K. Rif1 and rif2 inhibit localization of tel1 to DNA ends. Mol Cell. 2009 Feb 13;33(3):312-22. doi: 10.1016/j.molcel.2008.12.027. PubMed PMID: 19217405; PubMed Central PMCID: PMC2662776.

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Hirano Y, Reddy J, Sugimoto K. Role of budding yeast Rad18 in repair of HO-induced double-strand breaks. DNA Repair (Amst). 2009 Jan 1;8(1):51-9. doi: 10.1016/j.dnarep.2008.08.013. Epub 2008 Oct 11. PubMed PMID: 18824138; PubMed Central PMCID: PMC2631570.

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Hirano Y, Sugimoto K. Cdc13 telomere capping decreases Mec1 association but does not affect Tel1 association with DNA ends. Mol Biol Cell. 2007 Jun;18(6):2026-36. doi: 10.1091/mbc.e06-12-1074. Epub 2007 Mar 21. PubMed PMID: 17377065; PubMed Central PMCID: PMC1877102.

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Hirano Y, Sugimoto K. ATR homolog Mec1 controls association of DNA polymerase zeta-Rev1 complex with regions near a double-strand break. Curr Biol. 2006 Mar 21;16(6):586-90. doi: 10.1016/j.cub.2006.01.063. PubMed PMID: 16546083; PubMed Central PMCID: PMC7041964.

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Nakada D, Hirano Y, Tanaka Y, Sugimoto K. Role of the C terminus of Mec1 checkpoint kinase in its localization to sites of DNA damage. Mol Biol Cell. 2005 Nov;16(11):5227-35. doi: 10.1091/mbc.e05-05-0405. Epub 2005 Sep 7. PubMed PMID: 16148046; PubMed Central PMCID: PMC1266421.

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Nakada D, Hirano Y, Sugimoto K. Requirement of the Mre11 complex and exonuclease 1 for activation of the Mec1 signaling pathway. Mol Cell Biol. 2004 Nov;24(22):10016-25. doi: 10.1128/MCB.24.22.10016-10025.2004. PubMed PMID: 15509802; PubMed Central PMCID: PMC525484.

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Shiomi Y, Shinozaki A, Sugimoto K, Usukura J, Obuse C, Tsurimoto T. The reconstituted human Chl12-RFC complex functions as a second PCNA loader. Genes Cells. 2004 Apr;9(4):279-90. doi: 10.1111/j.1356-9597.2004.00724.x. PubMed PMID: 15066120.

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Naiki T, Wakayama T, Nakada D, Matsumoto K, Sugimoto K. Association of Rad9 with double-strand breaks through a Mec1-dependent mechanism. Mol Cell Biol. 2004 Apr;24(8):3277-85. doi: 10.1128/MCB.24.8.3277-3285.2004. PubMed PMID: 15060150; PubMed Central PMCID: PMC381673.

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Katou Y, Kanoh Y, Bando M, Noguchi H, Tanaka H, Ashikari T, Sugimoto K, Shirahige K. S-phase checkpoint proteins Tof1 and Mrc1 form a stable replication-pausing complex. Nature. 2003 Aug 28;424(6952):1078-83. doi: 10.1038/nature01900. PubMed PMID: 12944972.

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Nakada D, Matsumoto K, Sugimoto K. ATM-related Tel1 associates with double-strand breaks through an Xrs2-dependent mechanism. Genes Dev. 2003 Aug 15;17(16):1957-62. doi: 10.1101/gad.1099003. PubMed PMID: 12923051; PubMed Central PMCID: PMC196250.

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Nakada D, Shimomura T, Matsumoto K, Sugimoto K. The ATM-related Tel1 protein of Saccharomyces cerevisiae controls a checkpoint response following phleomycin treatment. Nucleic Acids Res. 2003 Mar 15;31(6):1715-24. doi: 10.1093/nar/gkg252. PubMed PMID: 12626713; PubMed Central PMCID: PMC152856.

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Ohta S, Shiomi Y, Sugimoto K, Obuse C, Tsurimoto T. A proteomics approach to identify proliferating cell nuclear antigen (PCNA)-binding proteins in human cell lysates. Identification of the human CHL12/RFCs2-5 complex as a novel PCNA-binding protein. J Biol Chem. 2002 Oct 25;277(43):40362-7. doi: 10.1074/jbc.M206194200. Epub 2002 Aug 8. PubMed PMID: 12171929.

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Shiomi Y, Shinozaki A, Nakada D, Sugimoto K, Usukura J, Obuse C, Tsurimoto T. Clamp and clamp loader structures of the human checkpoint protein complexes, Rad9-1-1 and Rad17-RFC. Genes Cells. 2002 Aug;7(8):861-8. doi: 10.1046/j.1365-2443.2002.00566.x. PubMed PMID: 12167163.

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Kondo T, Wakayama T, Naiki T, Matsumoto K, Sugimoto K. Recruitment of Mec1 and Ddc1 checkpoint proteins to double-strand breaks through distinct mechanisms. Science. 2001 Oct 26;294(5543):867-70. doi: 10.1126/science.1063827. PubMed PMID: 11679674.

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Naiki T, Kondo T, Nakada D, Matsumoto K, Sugimoto K. Chl12 (Ctf18) forms a novel replication factor C-related complex and functions redundantly with Rad24 in the DNA replication checkpoint pathway. Mol Cell Biol. 2001 Sep;21(17):5838-45. doi: 10.1128/MCB.21.17.5838-5845.2001. PubMed PMID: 11486023; PubMed Central PMCID: PMC87303.

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Naiki T, Sugimoto K. [Role of the RFC-related Rad24 protein in the DNA damage checkpoint pathway]. Tanpakushitsu Kakusan Koso. 2001 Jun;46(8 Suppl):1213-9. Review. PubMed PMID: 11436313.

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Wakayama T, Kondo T, Ando S, Matsumoto K, Sugimoto K. Pie1, a protein interacting with Mec1, controls cell growth and checkpoint responses in Saccharomyces cerevisiae. Mol Cell Biol. 2001 Feb;21(3):755-64. doi: 10.1128/MCB.21.3.755-764.2001. PubMed PMID: 11154263; PubMed Central PMCID: PMC86667.

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Naiki T, Shimomura T, Kondo T, Matsumoto K, Sugimoto K. Rfc5, in cooperation with rad24, controls DNA damage checkpoints throughout the cell cycle in Saccharomyces cerevisiae. Mol Cell Biol. 2000 Aug;20(16):5888-96. doi: 10.1128/MCB.20.16.5888-5896.2000. PubMed PMID: 10913172; PubMed Central PMCID: PMC86066.

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Kondo T, Matsumoto K, Sugimoto K. Role of a complex containing Rad17, Mec3, and Ddc1 in the yeast DNA damage checkpoint pathway. Mol Cell Biol. 1999 Feb;19(2):1136-43. doi: 10.1128/MCB.19.2.1136. PubMed PMID: 9891048; PubMed Central PMCID: PMC116043.

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Shimomura T, Ando S, Matsumoto K, Sugimoto K. Functional and physical interaction between Rad24 and Rfc5 in the yeast checkpoint pathways. Mol Cell Biol. 1998 Sep;18(9):5485-91. doi: 10.1128/MCB.18.9.5485. PubMed PMID: 9710632; PubMed Central PMCID: PMC109133.

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Sugimoto K, Ando S, Shimomura T, Matsumoto K. Rfc5, a replication factor C component, is required for regulation of Rad53 protein kinase in the yeast checkpoint pathway. Mol Cell Biol. 1997 Oct;17(10):5905-14. doi: 10.1128/MCB.17.10.5905. PubMed PMID: 9315648; PubMed Central PMCID: PMC232438.

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Funakoshi M, Sikder H, Ebihara H, Irie K, Sugimoto K, Matsumoto K, Hunt T, Nishimoto T, Kobayashi H. Xenopus cyclin A1 can associate with Cdc28 in budding yeast, causing cell-cycle arrest with an abnormal distribution of nuclear DNA. Genes Cells. 1997 May;2(5):329-43. doi: 10.1046/j.1365-2443.1997.1230320.x. PubMed PMID: 9280344.

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Sugimoto K, Shimomura T, Hashimoto K, Araki H, Sugino A, Matsumoto K. Rfc5, a small subunit of replication factor C complex, couples DNA replication and mitosis in budding yeast. Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):7048-52. doi: 10.1073/pnas.93.14.7048. PubMed PMID: 8692942; PubMed Central PMCID: PMC38933.

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Sugimoto K, Matsumoto K, Kornberg RD, Reed SI, Wittenberg C. Dosage suppressors of the dominant G1 cyclin mutant CLN3-2: identification of a yeast gene encoding a putative RNA/ssDNA binding protein. Mol Gen Genet. 1995 Oct 25;248(6):712-8. doi: 10.1007/BF02191711. PubMed PMID: 7476874.

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Sugimoto K, Sakamoto Y, Takahashi O, Matsumoto K. HYS2, an essential gene required for DNA replication in Saccharomyces cerevisiae. Nucleic Acids Res. 1995 Sep 11;23(17):3493-500. doi: 10.1093/nar/23.17.3493. PubMed PMID: 7567461; PubMed Central PMCID: PMC307229.

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Hisamoto N, Frederick DL, Sugimoto K, Tatchell K, Matsumoto K. The EGP1 gene may be a positive regulator of protein phosphatase type 1 in the growth control of Saccharomyces cerevisiae. Mol Cell Biol. 1995 Jul;15(7):3767-76. doi: 10.1128/MCB.15.7.3767. PubMed PMID: 7791784; PubMed Central PMCID: PMC230615.

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Hisamoto N, Sugimoto K, Matsumoto K. The Glc7 type 1 protein phosphatase of Saccharomyces cerevisiae is required for cell cycle progression in G2/M. Mol Cell Biol. 1994 May;14(5):3158-65. doi: 10.1128/mcb.14.5.3158-3165.1994. PubMed PMID: 8164671; PubMed Central PMCID: PMC358683.

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Doi K, Gartner A, Ammerer G, Errede B, Shinkawa H, Sugimoto K, Matsumoto K. MSG5, a novel protein phosphatase promotes adaptation to pheromone response in S. cerevisiae. EMBO J. 1994 Jan 1;13(1):61-70. doi: 10.1002/j.1460-2075.1994.tb06235.x. PubMed PMID: 8306972; PubMed Central PMCID: PMC394779.

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Valdivieso MH, Sugimoto K, Jahng KY, Fernandes PM, Wittenberg C. FAR1 is required for posttranscriptional regulation of CLN2 gene expression in response to mating pheromone. Mol Cell Biol. 1993 Feb;13(2):1013-22. doi: 10.1128/mcb.13.2.1013-1022.1993. PubMed PMID: 8423774; PubMed Central PMCID: PMC358986.

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Richardson H, Lew DJ, Henze M, Sugimoto K, Reed SI. Cyclin-B homologs in Saccharomyces cerevisiae function in S phase and in G2. Genes Dev. 1992 Nov;6(11):2021-34. doi: 10.1101/gad.6.11.2021. PubMed PMID: 1427070.

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Ghiara JB, Richardson HE, Sugimoto K, Henze M, Lew DJ, Wittenberg C, Reed SI. A cyclin B homolog in S. cerevisiae: chronic activation of the Cdc28 protein kinase by cyclin prevents exit from mitosis. Cell. 1991 Apr 5;65(1):163-74. doi: 10.1016/0092-8674(91)90417-w. PubMed PMID: 1849458.

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Wittenberg C, Sugimoto K, Reed SI. G1-specific cyclins of S. cerevisiae: cell cycle periodicity, regulation by mating pheromone, and association with the p34CDC28 protein kinase. Cell. 1990 Jul 27;62(2):225-37. doi: 10.1016/0092-8674(90)90361-h. PubMed PMID: 2142620.

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Lue NF, Flanagan PM, Sugimoto K, Kornberg RD. Initiation by yeast RNA polymerase II at the adenoviral major late promoter in vitro. Science. 1989 Nov 3;246(4930):661-4. doi: 10.1126/science.2510298. PubMed PMID: 2510298.

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Kubo T, Maeda A, Sugimoto K, Akiba I, Mikami A, Takahashi H, Haga T, Haga K, Ichiyama A, Kangawa K. Primary structure of porcine cardiac muscarinic acetylcholine receptor deduced from the cDNA sequence. FEBS Lett. 1986 Dec 15;209(2):367-72. doi: 10.1016/0014-5793(86)81144-9. PubMed PMID: 3792556.

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Sugimoto K, Nukada T, Tanabe T, Takahashi H, Noda M, Minamino N, Kangawa K, Matsuo H, Hirose T, Inayama S. Primary structure of the beta-subunit of bovine transducin deduced from the cDNA sequence. FEBS Lett. 1985 Oct 28;191(2):235-40. doi: 10.1016/0014-5793(85)80015-6. PubMed PMID: 2414128.

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Tanabe T, Nukada T, Nishikawa Y, Sugimoto K, Suzuki H, Takahashi H, Noda M, Haga T, Ichiyama A, Kangawa K. Primary structure of the alpha-subunit of transducin and its relationship to ras proteins. Nature. 1985 May 16-22;315(6016):242-5. doi: 10.1038/315242a0. PubMed PMID: 3923359.