Functional analysis of the interplay between translation termination, selenocysteine codon context, and selenocysteine insertion sequence-binding protein 2

J Biol Chem. 2007 Dec 21;282(51):36797-807. doi: 10.1074/jbc.M707061200. Epub 2007 Oct 22.

Abstract

A selenocysteine insertion sequence (SECIS) element in the 3'-untranslated region and an in-frame UGA codon are the requisite cis-acting elements for the incorporation of selenocysteine into selenoproteins. Equally important are the trans-acting factors SBP2, Sec-tRNA[Ser]Sec, and eEFSec. Multiple in-frame UGAs and two SECIS elements make the mRNA encoding selenoprotein P (Sel P) unique. To study the role of codon context in determining the efficiency of UGA readthrough at each of the 10 rat Sel P Sec codons, we individually cloned 27-nucleotide-long fragments representing each UGA codon context into a luciferase reporter construct harboring both Sel P SECIS elements. Significant differences, spanning an 8-fold range of UGA readthrough efficiency, were observed, but these differences were dramatically reduced in the presence of excess SBP2. Mutational analysis of the "fourth base" of contexts 1 and 5 revealed that only the latter followed the established rules for hierarchy of translation termination. In addition, mutations in either or both of the Sel P SECIS elements resulted in differential effects on UGA readthrough. Interestingly, even when both SECIS elements harbored a mutation of the core region required for Sec incorporation, context 5 retained a significantly higher level of readthrough than context 1. We also show that SBP2-dependent Sec incorporation is able to repress G418-induced UGA readthrough as well as eRF1-induced stimulation of termination. We conclude that a large codon context forms a cis-element that works together with Sec incorporation factors to determine readthrough efficiency.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • 3' Untranslated Regions / genetics
  • 3' Untranslated Regions / metabolism*
  • Animals
  • Cell-Free System / metabolism
  • Coccidiostats / pharmacology
  • Codon, Terminator / genetics
  • Codon, Terminator / metabolism*
  • Gentamicins / pharmacology
  • Luciferases / biosynthesis
  • Luciferases / genetics
  • Peptide Chain Termination, Translational / drug effects
  • Peptide Chain Termination, Translational / physiology*
  • Peptide Elongation Factors / genetics
  • Peptide Elongation Factors / metabolism
  • Peptide Termination Factors / genetics
  • Peptide Termination Factors / metabolism
  • RNA, Transfer, Amino Acyl / genetics
  • RNA, Transfer, Amino Acyl / metabolism*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Rabbits
  • Rats
  • Selenocysteine / genetics
  • Selenocysteine / metabolism*
  • Selenoprotein P / biosynthesis
  • Selenoprotein P / genetics

Substances

  • 3' Untranslated Regions
  • Coccidiostats
  • Codon, Terminator
  • Gentamicins
  • Peptide Elongation Factors
  • Peptide Termination Factors
  • RNA, Transfer, Amino Acyl
  • RNA-Binding Proteins
  • Selenoprotein P
  • selenocysteine insertion sequence binding protein, mammalian
  • selenocysteinyl-tRNA
  • Selenocysteine
  • antibiotic G 418
  • Luciferases